PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532204.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 26093.2 Da    PI: 10.178
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-2658108151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien+ nr+vt+skRr+g++KKA E+ vLCda+ a+iif+s+gk++ey+s
  XP_010532204.1  58 KRIENTNNRHVTYSKRRKGMMKKAREITVLCDAKLALIIFASSGKMHEYCS 108
                     79***********************************************96 PP

2K-box70.45.6e-24120194175
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                     yq+  gk+l+++k+esl++e++++kk ++nLq e+R+l+Ged++s+++k+L  +e+ Le++l ++R++++e l+e
  XP_010532204.1 120 YQQILGKRLWDEKHESLSNEMDRIKKDNDNLQIELRRLKGEDIQSMNYKDLIAIESVLETGLVHVRNRQMECLRE 194
                     78888999***************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-3950109IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.11850110IPR002100Transcription factor, MADS-box
CDDcd002657.60E-3551129No hitNo description
SuperFamilySSF554555.1E-3351145IPR002100Transcription factor, MADS-box
PROSITE patternPS00350052106IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-275272IPR002100Transcription factor, MADS-box
PfamPF003197.4E-2259106IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-277287IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-2787108IPR002100Transcription factor, MADS-box
PfamPF014863.1E-15131200IPR002487Transcription factor, K-box
PROSITE profilePS5129712.184133214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKLKQRFPLS AYCIIISFPS HLTLCLLQNQ ISETERERER EREREREREM GRGKIEIKRI  60
ENTNNRHVTY SKRRKGMMKK AREITVLCDA KLALIIFASS GKMHEYCSPS TNLAEMLGTY  120
QQILGKRLWD EKHESLSNEM DRIKKDNDNL QIELRRLKGE DIQSMNYKDL IAIESVLETG  180
LVHVRNRQME CLRELKRRES SFFLIREVSM PHPSQLRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-1851138180Myocyte-specific enhancer factor 2A
3kov_B4e-1851138180Myocyte-specific enhancer factor 2A
3kov_I4e-1851138180Myocyte-specific enhancer factor 2A
3kov_J4e-1851138180Myocyte-specific enhancer factor 2A
3p57_A4e-1851138180Myocyte-specific enhancer factor 2A
3p57_B4e-1851138180Myocyte-specific enhancer factor 2A
3p57_C4e-1851138180Myocyte-specific enhancer factor 2A
3p57_D4e-1851138180Myocyte-specific enhancer factor 2A
3p57_I4e-1851138180Myocyte-specific enhancer factor 2A
3p57_J4e-1851138180Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13747RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532206.11e-160PREDICTED: floral homeotic protein PISTILLATA-like isoform X3
RefseqXP_010532204.11e-160PREDICTED: floral homeotic protein PISTILLATA-like isoform X3
SwissprotP480071e-69PIST_ARATH; Floral homeotic protein PISTILLATA
SwissprotQ033781e-69GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A0D2N9L78e-75A0A0D2N9L7_G
STRINGVIT_18s0001g01760.t011e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-70MIKC_MADS family protein